PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.L6QML
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 274aa    MW: 32010.9 Da    PI: 5.0495
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.L6QMLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-073065148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ll+ +++ +G             +Rt+k+c++rw++yl
      Aradu.L6QML 30 RGPWTHEEDDLLKMCIAIHGL------------KRTGKSCRLRWLNYL 65
                     89******************4............599**********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0952569IPR017930Myb domain
SuperFamilySSF466893.17E-1528101IPR009057Homeodomain-like
SMARTSM007173.8E-62967IPR001005SANT/Myb domain
PfamPF002495.5E-73065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-133172IPR009057Homeodomain-like
CDDcd001672.37E-63265No hitNo description
SMARTSM00717270107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-773109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSFSSKSNNK NIISCSSEDD NNNKDNELRR GPWTHEEDDL LKMCIAIHGL KRTGKSCRLR  60
WLNYLKPDVK RGNLTPQEKL LIFELHSKWG DRTDNEIKNF WRTRIQKQVK YFKIDTLWRT  120
RFVDESKESY QEQNQNQALI IPTMSLDCVT QMQQYPSLIE EATPTPAKTQ IIPCERPSCM  180
MNGASSNCVD YSDYENNNNN NGSSCMSFTE STNMANMVQF EALDNITNAY DMDALNIDME  240
CQVSHNNWLD KDFVCTMWNM NMDELSHFRS IQNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-13271094108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200196.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9LK952e-37MYB21_ARATH; Transcription factor MYB21
TrEMBLV7CSX72e-63V7CSX7_PHAVU; Uncharacterized protein
STRINGGLYMA05G35050.11e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2979322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.14e-40myb domain protein 116